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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
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Posts
publications
Multi-Omics Alleviates the Limitations of Panel Sequencing for Cancer Drug Response Prediction Permalink
Published in Cancers, 2022
Recommended citation: Baranovskii, A.*, Gündüz, I. B.*, Franke, V., Uyar, B., & Akalin, A. (2022). Multi-Omics Alleviates the Limitations of Panel Sequencing for Cancer Drug Response Prediction. Cancers, 14(22), 5604. (*joint first authors) doi:10.3390/cancers14225604 https://doi.org/10.3390/cancers14225604
Cardiovascular Disease Biomarkers Derived from Circulating Cell-Free DNA Methylation Permalink
Published in NAR Genomics and Bioinformatics, 2023
Recommended citation: Cuadrat, R. R. C., Gündüz, I. B., et al. (2023). Cardiovascular Disease Biomarkers Derived from Circulating Cell-Free DNA Methylation. NAR Genomics and Bioinformatics. [TODO: add DOI / link / full author list]
LLMRS: Unlocking Potentials of LLM-Based Recommender Systems for Software Purchase Permalink
Published in 33rd Workshop on Information Technologies and Systems (WITS), 2024
Recommended citation: John, A., Gündüz, I. B., et al. (2024). LLMRS: Unlocking Potentials of LLM-Based Recommender Systems for Software Purchase. 33rd Workshop on Information Technologies and Systems (WITS). [TODO: add link / full author list]
Genetics and Environment Distinctively Shape the Human Immune Cell Epigenome Permalink
Published in Nature Genetics, 2025
Recommended citation: Wang, ..., Gündüz, I. B., et al. (2025). Genetics and Environment Distinctively Shape the Human Immune Cell Epigenome. Nature Genetics. [TODO: add DOI / link / full author list]
Dissecting the Epigenome Dynamics in Human Immune Cells upon Viral and Chemical Exposure by Multimodal Single-Cell Profiling Permalink
Published in Preprint, 2025
Recommended citation: Gündüz, I. B., et al. (2025). Dissecting the Epigenome Dynamics in Human Immune Cells upon Viral and Chemical Exposure by Multimodal Single-Cell Profiling. Preprint. [TODO: add DOI / link]
software
talks
teaching
Compgen2021: Hands-on Course on Machine Learning for Genomics
de.NBI Course, Berlin Institute for Medical Systems Biology, Max Delbruck Center, 2021
Single-Cell Bioinformatics Course, Saarland University Winter 2022
Course, Saarland University, 2022
As the teaching assistant of this course, I prepared the applied course material and assist the participants throught the projects.