As the teaching assistant of this course, I prepared the applied course material and assist the participants throught the projects.

General Info

• This course is credited with 9 CP for Bioinformatics (master) students. Medicine students can take it as a Wahlpflichtfach in the clinical part.

• The lecture will be held between 26.10.2022 and 08.02.2023

Learning Objectives

• 26.10.2022 Introduction Lecture, SG&A

• 28.10.2022 An Overview of Single Cell Sequencing

• 2.11.2022 scRNA-seq: Methods

• 4.11.2022 scRNA-seq: Data processing and Quality Control I

• 9.11.2022 scRNA-seq: Data processing and Quality Control II

• 11.11.2022 scRNA-seq: Data analysis

• 16.11.2022 Single Cell RNA Sequencing Differential Regulation and Pathway Analysis

• 18.11.2022 Cell Trajectory Inference

• 23.11.2022 Single-cell Epigenomics: Methods

• 25.11.2022 Single Cell ATAC Seq data analysis

• 30.11.2022 Single Cell Data Integration

• 2.12.2022 Single Cell Data Integration II and cell fate

• 7.12.2022 Single-cell Multiomics of transcriptome and epigenome

• 9.12.2022 Spatial Transcriptomics Methods

• 14.12.2022 Spatial Transcriptomics data analysis

• 16.12.2022 Spatial Omics

• 19.12.2022 - 6.1.2023 No Lectures

• 11.1.2023 Single Cell DNA Sequencing

• 13.1.2023 Single Cell Genetic Perturbation

• 18.1.2023 Single Cell Bacterial RNA Sequencing

• 20.1.2023 Single Molecule Sequencing

• 25.1.2023 Single Cell Proteomics

• 27.1.2023 MultiOmics and MultiScale Modeling

• 1.2.2023 Recap Lecture, Q&A

• 3.2.2023 Emerging Technologies

• 8.2.2023 Exam

Course Materials

• All of the course materials can be accessed from here.

• Tutorial materials can be accessed from here.